Mega Man Star Force (Nintendo Cinematic Universe)

Mega Man Star Force is a Japanese graphic novel series.

Pegasus/Leo/Dragon
A boy named Geo Staler teams up with Omega-Xis to become Star Force Mega Man.

Zerker × Ninja/Zerker × Saurian
Dr. Vega seeks to revive the ancient civilization of Mu and to use its power to rule the world.

Black Ace/Red Joker
Geo and Omega-Xis face an evil organization named Dealer and prevent them from using Noise Cards to corrupt the new technology, the Hunter-VG and the race of Wizards.

Pegasus/Leo/Dragon

 * Geo Staler has been mourning the disappearance of his father Kelvin after the explosion of the space station Peace three years ago, and as a result, he has not been attending school.
 * A group of children from Geo's class constantly urge Geo to attend school, but he always refuses.
 * One day, Geo comes home and finds Aaron Boreal, Kelvin's co-worker at the AMAKEN Space Agency, conversing with Geo's mother, Hope.
 * Aaron gives Geo the Visualizer, a glasses-like device that allows humans to see the EM Wave World.
 * Geo goes outside to sulk on an observation deck over the city when he puts the Visualizer on. Using it, he sees Omega-Xis, who recognizes Geo as Kelvin's son and quickly performs an Electromagnetic Wave Change with him, transforming into the Star Force version of Mega Man.
 * Omega-Xis is considered a traitor by the FM King because he has stolen the mysterious Andromeda Key, and he also claims to know about the events leading up to Kelvin's disappearance.
 * Geo agrees to work with Omega-Xis to protect the key, and thus, Omega-Xis resides within Geo's Transer much like Navis do in PETs. He is aided in his fight against the FMs by the three satellite Admins, Pegasus, Leo, and Dragon, who are also energy-based aliens.
 * For the first few "chapters" of the volumes, Geo is withdrawn and has trouble allowing himself to trust others. Later in the story however, he finds kindred spirits in a young pop idol Sonia Strumm, and a boy named Patrick Sprigs, who, like Geo, have lost loved ones and gain FM-ian partners. He forms a strong bond with Sonia, forming his first "BrotherBand" with her, and soon begins to open up to others, eventually becoming best friends with Pat.
 * However, Pat is revealed to suffer split-personality disorder. The cause of this was his being abandoned by his parents, who left him to fend for himself amongst the mountains of garbage on Dream Island. As he grew, he was desperate for some sort of companionship but he was never accepted by anyone, so he created a friend within himself which he named "Rey", his darker side.
 * Pat and his cruel "evil twin" transform into Gemini Spark and reveal they were just using Geo to obtain the Andromeda key the FM-ians failed to.
 * Geo's spirit is crushed, and he reveals that after he lost his father he decided he'd rather not bond with anyone if it meant he might lose that person too and he cuts his ties to all his friends.
 * Omega-Xis leaves, disappointed in Geo for reverting to his old ways after making so much progress.
 * Soon after, Aaron Boreal calls Geo to AMAKEN claiming he has made contact with Kelvin Stelar's space station. Only to find it has been seized by the FM-ian King who is on his way to destroy the Earth and feed the souls of Humanity to Andromeda.
 * Before Geo leaves, Aaron tells him the reason his father created the BrotherBand, the reason he searched the stars to find neighboring life forms was because he believed that bonds with others were the key to a better world, even a better universe. He wanted his son to grow up in a world where he would not have to fear anyone.
 * Geo's faith in his friends, humanity and himself is restored, and he sets out to find Omega-Xis. The two are again confronted by Gemini Spark, but Pat interferes to save Geo and allow him to reach the space station.
 * Upon reaching the station in his wave form, Omega-Xis reveals to Geo that he knew Kelvin Stelar before coming to earth, but converted him into a wave form so the astronaut could escape the king's wrath. At this point, Kelvin's spirit could be anywhere in the universe, but it is not likely Geo will ever be reunited with his Dad.
 * Geo is undaunted and remains hopeful. He soon meets the King and must kill Andromeda before the earth is lost forever. He defeats Andromeda but spares the King, following his father's dream to establish peace with other life.
 * The king tells Geo his name is Cepheus, but asks Geo how he could possibly trust one from another world, for he never has. Eventually, he is convinced that he and Geo are kindred spirits and must both set out to make their parts of the universe a better place.
 * Geo is ready to return to earth, but the station begins falling apart and he is cut off from the wave road he used to reach the station in the first place and he is forced to escape via a derelict escape pod. For days he and Omega-Xis drift through space, doomed to die on this spacecraft and be lost in the void forever but just as Geo is ready to give up hope, somehow, from the endless vastness of space, his father's spirit is finally able to reach him.
 * Geo is confronted by his father in a dream where he tells Geo he must hold on to those he loves most and as long as he keeps believing in them, Kelvin shall always watch over him, no matter how far apart they are.
 * At that moment, Geo's friends, even Pat, have gathered at Geo's favorite spot to call him back home. The strength of their bonds causes all their BrotherBands to converge into a beam that connects with Geo's space pod and miraculously saves him.
 * Geo simply watches the earth draw closer as he is brought home, never to be the boy he used to be again.

Zerker × Ninja/Zerker × Saurian

 * Geo has adjusted to life with Omega-Xis, and has made many new friends.
 * Geo is eager to receive a new transfer known as a Star Carrier that he has waited two months for.
 * One day, Geo and his friends decide to travel to the technological hub of Wilshire Hills in IFL City, where they witness a new device known as the Star Carrier at work. The Star Carrier is able to take radio waves and transform them into material objects, known as Matter Waves.
 * While watching a movie, Geo and his friends witness an attack by a mysterious man named Hyde, who partners with an Unidentified Mysterious Animal, or UMA, named Phantom in order to wreak havoc.
 * After fusing with Phantom, Hyde becomes Dark Phantom. When Dark Phantom is defeated by Mega Man, he flees.
 * Hyde is later revealed to work for Dr. Vega, a scientist who is obsessed with reviving the lost continent of Mu. She has allied herself with Solo who can wave change into his alter ego Rogue, the last survivor of Mu, and the UMAs to achieve this goal.
 * After a few days, Geo goes on a date with Sonia Strumm to the museum. There, Solo appears and tries to steal the OOPArt, a device of incredible power which Dr. Vega seeks. After Omega-Xis accidentally eats the OOPArt, Geo and Mega start to have weird dreams where the OOPArt is trying to take over their body.
 * Days later, Solo goes to Echo Ridge to recover the OOPArt from Geo. During the process, Solo and Geo have a Wave Battle in their both forms of Mega Man and Rogue.
 * After the battle, Solo is convinced that in order to make Geo more powerful, he first must destroy his bonds, using a machine that makes a Black Hole; causing Sonia, Bud and Zack to disappear. Luna was rescued by Geo before she was taken away like the others.
 * Geo tormented himself about this event, believing that he was not powerful enough to rescue the others.
 * When Hyde kidnaps Luna, Mega Man has to use the OOPArt's power. Before he was eaten away by the OOPArt, Luna's voice gives him the power to take control of the OOPArt. Afterwards the power of the OOPArt is his to use.
 * Many events later, the OOPArt is taken from Mega Man and its power is used to revive Mu.
 * The OOPArt has left some of its power inside Omega-Xis so he is still able to tribe on.
 * Megaman finds Mu in the Bermuda Maze, and defeats the enemies inside (with some help from Rogue) and finds Dr. Vega.
 * After Mega Man defeats Le Mu, Vega reveals her true motive. When her lover Altair (the only person she ever formed a Brotherband with) died after being sent to war, she became bitter, and began to blame the world for taking Altair from her. To this end, she became a scientist, with her research leading to the invention of matter waves (and by extension, the Star Carrier). Using this technology, she was able to recreate a holographic image of Altair. However, he did not have Altair's memories; he was merely a hollow shell who nonetheless served Vega faithfully (hence the name "Hollow"). After learning about the lost continent of Mu, she began to make plans to revive it in the hopes that Mu's "advanced technology" would be able to revive Altair. She asks Le Mu to use the last of his powers to drop Mu from the sky and crush the Earth below. Just then, Le Mu lets off an explosion that blows Mega Man and Dr. Vega away. Hollow saves Dr. Vega in the process, but dies. His prayers reach Altair who tells Vega to not seek revenge on the world and instead lead a happy life.
 * Mega Man goes up to Le Mu and destroys him with the support of the voices of his friends. Just then, he collapses from exhaustion as Mu falls into the ocean.
 * Geo wakes up to find out that Solo had saved him. However, he insists he didn't do it out of charity, saying "Your body got in my way, so I carried it here". Solo wishes to challenge Geo again one day and leaves as Geo reunites with his friends.

Black Ace/Red Joker

 * With the onset of Wizards, humans find themselves at a surprising new level of convenience.
 * However, after further research, scientists have made a startling discovery that Wizards are emitting an abnormally large amount of Noise waves that are causing disruption in the wave world.
 * To make matters worse, some Wizards have lost control and gone on rampages due to overexposure to Noise.
 * A crime syndicate known as Dealer begins manipulating and collecting the Noise for their leader named Mr. King who poses as a charitable businessman for the public eye.
 * Dealer has a playing card motif and uses Noise cards to transform Wizards into powerful EM beings in order to heighten surrounding Noise levels. (For example, a Wizard known as Magnes is given the Spade card to transform into the vicious Spade Magnes.) Dealer's true intentions involve manipulating a powerful mass of Noise called Meteor G that is on a crash-course for Earth, and using it to take the world hostage.
 * Geo Stelar and Omega-Xis find themselves in the middle of various Dealer attacks and begin thwarting their plans as Mega Man.
 * A young Satella Police member named A.C. Eos (A.C.E or simply Ace) takes notice and decides to enlist Geo as a commando in the fight against Dealer, especially since Mega Man is able to utilize Noise positively.
 * Geo's friends Bud Bison (with Wizard Taurus) and teen pop sensation Sonia Strumm (with Wizard Lyra) also join in the struggle against Dealer.
 * Solo also makes a return, this time battling against Dealer for personal reasons, in which Dealer is abusing and misusing the power of Mu.
 * After defeating the Kelvin-infused Crimson Dragon, Geo returns to earth, followed by Omega-Xis and Kelvin 2 weeks after. The Stelar family finally reunites, as seen in a picture.

Pegasus/Leo/Dragon

 * Based on Mega Man Star Force.

Zerker × Ninja/Zerker × Saurian

 * Based on Mega Man Star Force 2.

Black Ace/Red Joker

 * Based on Mega Man Star Force 3.